1. Casey Stoner AUS Ducati Marlboro Team (B) 1min 33.083 secs
2. Marco Melandri ITA Honda Gresini (B) 1min 33.762 secs
3. Dani Pedrosa SPA Repsol Honda Team (M) 1min 33.881 secs
4. Alex Barros BRA Pramac d'Antin (B) 1min 33.979 secs
5. Chris Vermeulen AUS Rizla Suzuki MotoGP (B) 1min 34.059 secs
6. Valentino Rossi ITA Fiat Yamaha Team (M) 1min 34.102 secs
7. Nicky Hayden USA Repsol Honda Team (M) 1min 34.226 secs
8. Loris Capirossi ITA Ducati Marlboro Team (B) 1min 34.242 secs
9. Colin Edwards USA Fiat Yamaha Team (M) 1min 34.259 secs
10. John Hopkins USA Rizla Suzuki MotoGP (B) 1min 34.315 secs
11. Carlos Checa SPA Honda LCR (M) 1min 34.324 secs
12. Toni Elias SPA Honda Gresini (B) 1min 34.363 secs
13. Sylvain Guintoli FRA Dunlop Yamaha Tech 3 (D) 1min 34.420 secs
14. Makoto Tamada JPN Dunlop Yamaha Tech 3 (D) 1min 34.549 secs
15. Randy de Puniet FRA Kawasaki Racing Team (B) 1min 34.563 secs
16. Shinya Nakano JPN Konica Minolta Honda (M) 1min 34.577 secs
17. Anthony West AUS Kawasaki Racing Team (B) 1min 35.000 secs
18. Chaz Davies GBR Pramac d'Antin (B) 1min 35.029 secs
19. Kurtis Roberts USA Team Roberts (M) 1min 35.404 secs

2006 Valencian Grand Prix: Pole position: Valentino Rossi ITA Camel Yamaha (M) 1min 31.002secs Fastest race lap: Loris Capirossi ITA Ducati Marlboro (B) 1min 32.924secs