1. James Toseland GBR Hannspree Ten Kate Honda CBR 1000RR 1min 40.718 secs
2. Michel Fabrizio ITA DFX Treme Honda CBR 1000RR 1min 40.728 secs
3. Troy Bayliss AUS Ducati Xerox 999F07 1min 40.731 secs
4. Lorenzo Lanzi ITA Ducati Xerox 999F07 1min 40.928 secs
5. Max Neukirchner GER Suzuki Germany GSXR1000 K7 1min 40.979 secs
6. Noriyuki Haga JPN Yamaha Motor Italia YZF R1 1min 41.022 secs
7. Fonsi Nieto SPA PSG-1 Kawasaki Corse ZX10R 1min 41.188 secs
8. Troy Corser AUS Yamaha Motor Italia YZF R1 1min 41.194 secs
9. Ruben Xaus SPA Sterilgarda Ducati 999F06 1min 41.469 secs
10. Regis Laconi ITA PSG-1 Kawasaki Corse ZX10R 1min 41.739 secs
11. Roberto Rolfo ITA Hannspree Ten Kate Honda CBR 1000RR 1min 41.760 secs
12. Karl Muggeridge AUS Alto Evolution Honda CBR 1000RR 1min 41.830 secs
13. Max Biaggi ITA Alstare Suzuki Corona Extra GSXR1000 K7 1min 41.845 secs
14. Yoann Tiberio FRA Alto Evolution Honda CBR 1000RR 1min 42.382 secs
15. Jakub Smrz CZE Team Caracchi Ducati SC 999 F05 1min 42.401 secs
16. Steve Martin AUS Celani Suzki Italia GSXR1000 K6 1min 42.447 secs
17. Shinichi Nakatomi JPN Yamaha Motor France-Ipone YZF R1 1min 43.119 secs
18. Guillaume Dietrich FRA Suzuki Germany GSXR1000 K7 1min 43.843 secs
19. Lorenzo Morelli ITA DFX Treme Honda CBR 1000RR 1min 44.262 secs
20. Dean Ellison GBR Team Pedercini Ducati 999RS 1min 45.256 secs

Magny-Cours official WSBK lap records: Best lap: Troy Corser AUS Suzuki 1min 39.147secs (2006) Superpole: Troy Corser AUS Suzuki 1min 39.147secs (2006) Fastest lap: Troy Bayliss AUS Ducati 1min 40.370secs (2006)